Showing posts with label liver. Show all posts
Showing posts with label liver. Show all posts

Monday, February 10, 2014

Whether or not Round-Up Kills

This post is going to look into the topic of Round-Up.

You may have seen bottles of Round-Up at Home Depot and other retail stores. It's a weed and grass killer that many people use to get rid of weeds/grass on driveways, pathways or flower beds. The active ingredient in the herbicide is glyphosate.

So how does glyphosate kill weeds and other plants (source is here)? It basically interferes with a biochemical pathway which plants need in order to make 3 crucial amino acids (in case you were curious, the name of the pathway is the shikimate pathway). It messes up one of the enzymes needed in the pathway, the amino acids never get made, and the plant dies. The enzyme that gets inhibited by glyphosate is called 5-enolpyruvylshikimate-3-phosphate synthase, but it's been wisely abbreviated as EPSP (phew!). I could only find evidence that this enzyme exists in plants, fungi, and microbes. So it does not seem to be present in animals.

There is a bacteria whose EPSP enzyme is not affected by glyphosate. The EPSP synthase gene from that bacteria has been inserted into specific crops, thereby creating glyphosate resistant crops. As a consequence, growers can spray their fields with glyphosate/Round-Up. Most plants/weeds will die because the EPSP synthase enzyme will be inhibited. But the transgenic crop will continue to grow because it has the bacterial version of EPSP synthase, whose activity is unaffected by glyphosate.

Round-up Resistant crops have been growing long enough that Monsanto's patent on Round-up has expired (note that the patent on the GMO seeds has not expired, so I think that growers who use Monsanto Round-up Resistant crops have to use Monsanto's Round-up). (I've been corrected on that last comment. Growers who use Monsanto seeds to not have to use Monsanto's Round-Up).

This week I received requests from two people to review papers that look at glyphosate causing cell death. The most recent paper published on the topic came out last month in the International Journal of Toxicology (as a side-note, it took me forever to get a copy of this paper. We scientists should be more vocal in our demands for open-access journals). Due to this paper, there has been a flurry of articles/blogs highlighting the dangers of GMOs. So what did they do in the paper? Basically, they took liver cell lines and grew them under different conditions. As treatments, they used diluted Round-Up, as well as several components of Round-Up. Then they examined cell death both directly, as well as biochemically (they looked for the presence/absence of proteins associated with cell death). To summarize their results, the cells treated with Round-Up died.

Similar studies had been performed by other groups. A study published in 2009 (which I do not have access to and could only read the abstract) reported similar findings. What was unique about the more recent paper is that they used less Round-Up for their study.

I bet you're wondering if I will stop feeding my family Round-Up Resistant GMOs over this. There are several thoughts going through my head over this.

1) How much glyphosate are you really eating? When I first read these papers, my gut reaction was "hmmm... I should do a better job washing my fruits and veggies". But then it hit me: none of my fruits and veggies are glyphosate-resistant GMOs. Round-Up Ready seeds are cash crops: canola, corn, cotton, etc. Our bananas, apples, delicious peaches, and succulent pomegranates are not GMOs (although I've previously argued for a GMO pomegranate... I'd buy that sucker in a heartbeat). By the time any components from glyphosate-resistant GMOs enter my food, they've been washed, stripped, boiled, pressed and reduced to a compound. So how much glyphosate is actually there? I tried to do a web search to find out how much glyphosate is in processed food, and I had a tough time with that search. Thanks to twitter, it was suggested that I review a report put together by the USDA's Agricultural Marketing Service (thank you @geneticmaize!). This annual report examines the amount of pesticide in our food and water, including items such as baby food. For the analysis, all items are prepared in the way we normally eat them; for example, tangerines are peeled, bell peppers are gently washed under cold water, etc. They examine both imported and national produce, and one of the items they examined in their 2011 report (released in 2013) was the amount of glyphosate in soybean. The results state: "Of the 300 samples tested, 271 (90.3 percent) of samples contained glyphosate at levels ranging from 0.26 parts per million (ppm) to 18.5 ppm." The tolerance of glyphosate is set at 20 ppm, so none of the samples tested exceeded the maximum allowable levels. So we're not eating any more than we should in our food supply. However, one may argue that perhaps the "amount we should be eating" is not set correctly, which is what the papers I originally cited above will argue.  That brings us to point #2.

2) In vivo and in vitro studies are vastly different. Spouse: I know you just read that and said "what??" In vitro means tissue culture or lab work. In vivo means live rats, mice, or other model organisms. So what does my statement mean? Here's an example: we use Windex every once in a while (no where near as much as we should, according to My Big Fat Greek Wedding). You probably don't think twice about it. Now, would you ever consider spraying it directly in your eye? Would you consider spraying it on an open wound, even if you water it down? If you were to design an experiment to test the toxicity of Windex, which one is more accurate: to spray Windex, use it as instructed, and measure what it does to you over a period of time? Or would you spray it on an open wound in diluted form and measure what it does over a period of time? You could argue that you should do both. However, scenario #2 is not what happens in the real world.  In vitro studies (which are tissue cultures in the lab), are basically cells out in the open. It's difficult to work with them and I'm sure you heard me whine and complain about my cells "dying" when I was back in grad school. They're finicky and they die when you don't shower them with loving care. They're excellent models for many things. But I'm not sure if they're a good model for measuring toxicity, because it's like spraying something directly onto an open wound, but with the effect amplified x1000. Which is why toxicity for EVERY COMPOUND I USE IN THE LAB is measured with in vivo models (that means rats and mice). Check out the Material Safety Data Sheet for water: they tested it on rats. If we are to begin measuring the toxicity of compounds using in vitro assays, then we have to go back and do this for everything we use and eat in our daily lives. I am willing to bet a trip for two to Morocco (which is the next place on my list of places to visit... hint, hint Spouse), that the majority of the compounds we use in our daily lives will kill cells in vitro.

Even the use of in vivo studies can be argued as being too rigorous. I remember that one of the post-docs that did my training would seldom wear gloves in the lab, even when working with Ethidium Bromide, which is a known carcinogen. When I asked him what the hell he was doing, he said that to replicate the rat studies which demonstrate the carcinogenic behaviour of Ethidium Bromide in humans, you'd have to take a syringe-full of the compound and inject it directly into your bloodstream. Of course, I use gloves and goggles when working with that crap because I believe that safety recommendations are put in place for a reason, but I thought that it was an interesting argument (although I don't agree with it). Which brings me to point #3.

3) No one ever said glyphosate was good for you. Dude, it's an herbicide. People have committed suicide by drinking it. As such, you have to wear protective gear and use it carefully, as outlined in the instructions for use and the Material Safety Data Sheet. Check out all the warning messages and icons on the instructions for use (yeah... they're in Spanish, but I'm testing to see if icons are universal :) ). So am I surprised that in vitro cells will die with glyphosate? Hellz to the no. But, that brings us to an important point: these studies may highlight the fact that it's important to review maximum limits of exposure for workers who work with these chemicals and that employees should be properly trained. This 2013 story from the Associated Press highlights what can happen when glyphosate is improperly used and when proper safety standards are not in place (although it's been spun by many to be about the evils of Monsanto and glyphosate). But that also brings me to my final point.

4) Is it safer than the alternative? If you believe that there's a lot of glyphosate residue in processed food and that glyphosate in our food supply will harm you, but that it's being covered up Monsanto, then the alternative is to eat certified organic foods. Keep in mind that if you believe that story, then you have to believe that this is a massive cover-up involving hundreds of scientists who want to kill you (in which case, you've uncovered the Oath of all Scientists). Then the question becomes: is it any better? A very common misconception is that organic food crops do not use pesticide/herbicide. They do. I think that the only way to make sure that absolutely no pesticide/herbicide is used is to grow your own food, but it would be incredibly naive to believe that everyone could grow their own foods. The full list of substances that are allowed under US Organic Certification is listed here. For example, if you scan through the list you'll see that hydrogen peroxide is an allowable substance for plant disease control. Here's the MSDS sheet for hydrogen peroxide. If you've ever had it applied to a wound as a disinfectant, I probably don't need to tell you that if you dilute it and put it on cells in tissue culture, they'll probably die.

So, what's my conclusion? I don't think there's enough evidence that sufficient glyphosate is in our food supply to merit any alarm or that there's enough glyphosate in our food supply to be toxic to us. I think that the revision for limits of exposure of chemicals is a good idea if there's any new data suggesting that it should be re-examined. I don't think that the papers on cells dying in tissue culture are enough evidence to merit this re-examination. I think that glyphosate is a chemical that is dangerous at certain limits, but I also don't think that glyphosate should be treated any differently than any other chemical and compound that we're exposed to. I'm of the opinion that there's no global conspiracy to poison us: that scientists are out there doing their job just like you and me. As a consequence, I believe that Material Safety Data Sheets and EPA guidelines are drafted and implemented with a body of data that has been gathered after proper testing. Otherwise, I'm truly SOL given the stuff I work with in the lab all day.

3/23/2015: The International Agency for Research on Cancer recently updated their categorization for glyphosate based on existing research, suggesting that it's a possible carcinogen (group 2A classification). I have to read the papers that they reviewed to determine exactly what studies placed the compound in this category. However, it's important to note that their categorization was extremely specific: risk for non-Hodgkin lymphoma in agricultural exposure, and evidence in animal models, so it meshes with what I've already written above. I'll write up a new post after I've reviewed the papers.

Saturday, August 24, 2013

GMOs and Liver Problems

This week, I continue my review of the health impacts of GMOs, as outlined by the Institute for Responsible Technology. I won't lie: I'm starting to develop a strong bias against them, because nothing they've said so far has been accurate. And this is my fourth installment on the topic.

File:Leber Schaf.jpgI start at a section entitled "GMOs and liver problems". There are 3 statements and 4 references tied to the section and one can be discounted right off the bat. Before I continue, I feel the need to explain when/why articles or references can be discarded (this  explanation is brought to you by Biochica's spouse, who runs a constant commentary in my mind). The section ended up being pretty long so it is now a permanent section in this blog.

I hope you went and read the page, so let us proceed with the analysis of the 3 statements associated with liver problems:
  • Rats fed GM potatoes had smaller, partially atrophied livers.
    • Based on the abstract, this paper seems to be a review of existing literature on the subject of the impact of GM foodcrop on human health. The paper's conclusion is that funding is needed to develop tools for the identification and elimination of GM crops in our food system. What does that have to do with livers?? I did a search in pubmed using search terms "rat GM potato liver". I found two papers on the topic and did a quick read of the abstracts: both had done feeding studies on rats using GM potatoes (one had done the study for 5 generations) and both found that there was no difference between rats fed GM potatoes and those who had been fed non-GM potatoes.
  • The livers of rats fed GM canola were 12-16% heavier.
    • This was comments to Food Standards Australia/New Zealand, written by the Public Health Association of Australia (see the References tab for an explanation on "comments"). The link provided by IRT was dead and a search in google only brought up this same statistic in other anti-GMO pages. I searched pubmed looking for a paper using search terms "rat canola GM liver" and different variations of this, and didn't find anything. It seems that this statistic has been recirculated many times, but I have no idea where it came from. 
  • GM soy altered mouse liver cells in ways that suggest a toxic insult. The changes reversed after they switched to non-GM soy.
    • There were two references for this citation (one for each sentence). For the first, I read the entire paper and although it may sound harsh, I have no idea how it ever got published. My biggest beef with the paper is sample size: they took 24 mice; half ate food with 14% GM soybean and half didn't. Then, they sacrificed the mice at 1, 2, 5, or 8 months of birth. If you do the math, that represents only 2 mice per group. The authors state that there were differences in the shape and components within the nucleus of liver cells. But due to the low number of mice they used, you can't really determine if the difference in these was due to the age of the mouse or due to the type of food. Every time there was statistical significance for food type, it was also paired with statistical significance for the age of the mouse. Since changes in the shape of liver nuclei are known to happen with age, I don't really think it's possible to parse apart cause/effect. This study should have been done with all the mice being sacrificed at the same time point, so that there would only be one variable. Even if the study had been done correctly, the authors state that they don't have a hypothesis on how this could be happening.
    • The second study is a follow-up on the first, and I found the paper online. They took 12 mice and split them into two groups: they fed half of them GM soybean and half were fed non-GM soybean. Then after 3 months, they swapped the diets between the two group and examined the livers (pretty sloppy to not include a group that was fed non-GM and a group that was fed GM throughout the duration of the experiment, as controls). The authors state that there were differences in components of the nucleus of liver cells. When they performed experiments to back-up the microscopy observations, they didn't find statistical significance.
    • So, in summary, two papers with inconclusive findings, even if you overlook the flaws in the controls and numbers.
Another section of IRT's "Health Risks" where no risks were identified. On the plus side, I relearned a lot about the nucleolus that I had forgotten. In the fifth installment, dissecting the IRT's webpage, I'll look at GMOs, reproductive problems, and infant mortality. Yikes! (although, given everything I've read so far from their webapge, it will probably be more like 'meh').